Frishman, Dmitrij : rechercher sur Z-Library

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1

Knowledge-based protein secondary structure assignment

Dmitrij Frishman, Patrick Argos

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

1995

Langue:

english

Fichier:

PDF, 1.32 MB

english, 1995

2

Identification of novel hereditary cancer genes by whole exome sequencing

Sokolenko, Anna P., Suspitsin, Evgeny N., Kuligina, Ekatherina Sh, Bizin, Ilya V., Frishman, Dmitrij, Imyanitov, Evgeny N.

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 515 KB

english, 2015

3

10.1038/45977

Hartl, F. Ulrich, Houry, Walid A., Frishman, Dmitrij, Eckerskorn, Christoph, Lottspeich, Friedrich

Journal:

Année:

1999

Langue:

english

Fichier:

PDF, 387 KB

english, 1999

4

TargetSpy: a supervised machine learning approach for microRNA target prediction

Martin Sturm, Michael Hackenberg, David Langenberger, Dmitrij Frishman

Journal:

BMC Bioinformatics

Année:

2010

Langue:

english

Fichier:

PDF, 1.45 MB

english, 2010

5

Incorporation of non-local interactions in protein secondary structure prediction from the amino acid sequence

Frishman, Dmitrij, Argos, Patrick

Journal:

Protein Engineering Design and Selection

Année:

1996

Langue:

english

Fichier:

PDF, 5.71 MB

english, 1996

6

Structural consequences of mutations associated with idiopathic restrictive cardiomyopathy

Tarnovskaya, Svetlana, Kiselev, Artem, Kostareva, Anna, Frishman, Dmitrij

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.85 MB

english, 2017

7

Single-read sequence tags of a limited number of genomic DNA fragments provide an inexpensive tool for comparative genome analysis

Hartung, Kristina, Frishman, Dmitrij, Hinnen, Albert, Wölfl, Stefan

Journal:

Année:

1998

Langue:

english

Fichier:

PDF, 105 KB

english, 1998

8

Seventy-five percent accuracy in protein secondary structure prediction

Dmitrij Frishman, Patrick Argos

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

1997

Langue:

english

Fichier:

PDF, 133 KB

english, 1997

9

Testis-specific glyceraldehyde-3-phosphate dehydrogenase: origin and evolution

Mikhail L Kuravsky, Vladimir V Aleshin, Dmitrij Frishman, Vladimir I Muronetz

Journal:

BMC Evolutionary Biology

Année:

2011

Langue:

english

Fichier:

PDF, 1.21 MB

english, 2011

10

Will my protein crystallize? A sequence-based predictor

Pawel Smialowski, Thorsten Schmidt, Jürgen Cox, Andreas Kirschner, Dmitrij Frishman

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2006

Langue:

english

Fichier:

PDF, 386 KB

english, 2006

11

Defining the fold space of membrane proteins: The CAMPS database

Antonio J. Martin-Galiano, Dmitrij Frishman

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2006

Langue:

english

Fichier:

PDF, 502 KB

english, 2006

12

Predicting experimental properties of integral membrane proteins by a naive Bayes approach

Antonio J. Martin-Galiano, Pawel Smialowski, Dmitrij Frishman

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2008

Langue:

english

Fichier:

PDF, 218 KB

english, 2008

13

Prediction of helix–helix contacts and interacting helices in polytopic membrane proteins using neural networks

Angelika Fuchs, Andreas Kirschner, Dmitrij Frishman

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2009

Langue:

english

Fichier:

PDF, 358 KB

english, 2009

14

Current status of membrane protein structure classification

Sindy Neumann, Angelika Fuchs, Armen Mulkidjanian, Dmitrij Frishman

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2010

Langue:

english

Fichier:

PDF, 1016 KB

english, 2010

15

Structural comparison and classification of alpha-helical transmembrane domains based on helix interaction patterns

Angelika Fuchs, Dmitrij Frishman

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2010

Langue:

english

Fichier:

PDF, 600 KB

english, 2010

16

Camps 2.0: Exploring the sequence and structure space of prokaryotic, eukaryotic, and viral membrane proteins

Sindy Neumann, Holger Hartmann, Antonio J. Martin-Galiano, Angelika Fuchs, Dmitrij Frishman

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2012

Langue:

english

Fichier:

PDF, 1.77 MB

english, 2012

17

Recognition of distantly related proteins through energy calculations

Ruben Abagyan, Dmitrij Frishman, Patrick Argos

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

1994

Langue:

english

Fichier:

PDF, 956 KB

english, 1994

18

Cloning and characterization of Enterobacter sakazakii pigment genes and in situ spectroscopic analysis of the pigment

Angelika Lehner, Maya Grimm, Thomas Rattei, Andreas Ruepp, Dmitrij Frishman, Giuseppe G.G. Manzardo, Roger Stephan

Journal:

FEMS Microbiology Letters

Année:

2006

Langue:

english

Fichier:

PDF, 119 KB

english, 2006

19

10.1038/35035069

Baumeister, Wolfgang, Ruepp, Andreas, Graml, Werner, Santos-Martinez, Martha-Leticia, Koretke, Kristin K., Volker, Craig, Mewes, H. Werner, Frishman, Dmitrij, Stocker, Susanne, Lupas, Andrei N.

Journal:

Année:

2000

Langue:

english

Fichier:

PDF, 218 KB

english, 2000

20

Protein structural classes in five complete genomes

Frishman, Dmitrij, Mewes, H.Werner

Journal:

Natural Structural Biology

Année:

1997

Fichier:

PDF, 442 KB

1997

21

Identification of 42 Possible Cytochrome C Genes in the Shewanella oneidensis Genome and Characterization of Six Soluble Cytochromes

Meyer, Terry E., Tsapin, Alexandre I., Vandenberghe, Isabel, De Smet, Lina, Frishman, Dmitrij, Nealson, Kenneth H., Cusanovich, Michael A., Van Beeumen, Jozef J.

Journal:

Omics A Journal of Integrative Biology

Année:

2004

Langue:

english

Fichier:

PDF, 810 KB

english, 2004

22

Conservation of protein–protein interactions – lessons from ascomycota

Philipp Pagel, Hans-Werner Mewes, Dmitrij Frishman

Journal:

Trends in Genetics

Année:

2004

Langue:

english

Fichier:

PDF, 191 KB

english, 2004

23

Genome-based structural biology

Dmitrij Frishman, Hans-Werner Mewes

Journal:

Progress in Biophysics and Molecular Biology

Année:

1999

Langue:

english

Fichier:

PDF, 830 KB

english, 1999

24

PEDANTic genome analysis

Dmitrij Frishman, Hans-Werner Mewes

Journal:

Trends in Genetics

Année:

1997

Langue:

english

Fichier:

PDF, 144 KB

english, 1997

25

The future of protein secondary structure prediction accuracy

Dmitrij Frishman, Patrick Argos

Journal:

Folding and Design

Année:

1997

Langue:

english

Fichier:

PDF, 93 KB

english, 1997

26

Iron-regulatory protein-1 (IRP-1) is highly conserved in two invertebrate species : Characterization of IRP-1 homologues in Drosophila melanogaster and Caenorhabditis elegans

Martina Muckenthaler, Niki Gunkel, Dmitrij Frishman, Anna Cyrklaff, Pavel Tomancak, Matthias W. Hentze

Journal:

Année:

1998

Langue:

english

Fichier:

PDF, 1.15 MB

english, 1998

27

PROSO II – a new method for protein solubility prediction

Pawel Smialowski, Gero Doose, Phillipp Torkler, Stefanie Kaufmann, Dmitrij Frishman

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 188 KB

english, 2012

28

No statistical support for correlation between the positions of protein interaction sites and alternatively spliced regions

Marc N Offman, Ramil N Nurtdinov, Mikhail S Gelfand, Dmitrij Frishman

Journal:

BMC Bioinformatics

Année:

2004

Langue:

english

Fichier:

PDF, 929 KB

english, 2004

29

PROMPT: a protein mapping and comparison tool

Thorsten Schmidt, Dmitrij Frishman

Journal:

BMC Bioinformatics

Année:

2006

Langue:

english

Fichier:

PDF, 752 KB

english, 2006

30

Applying negative rule mining to improve genome annotation

Irena I Artamonova, Goar Frishman, Dmitrij Frishman

Journal:

BMC Bioinformatics

Année:

2007

Langue:

english

Fichier:

PDF, 319 KB

english, 2007

31

Protein abundance profiling of the Escherichia coli cytosol

Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman

Journal:

Année:

2008

Langue:

english

Fichier:

PDF, 1.01 MB

english, 2008

32

Conservation of Aconitase Residues Revealed by Multiple Sequence Analysis : Implications for Structure/Function Relationships

Dmitrij Frishman, Matthias W. Hentze

Journal:

Année:

1996

Langue:

english

Fichier:

PDF, 503 KB

english, 1996

33

DSBC Protein: A New Member of the Thioredoxin Fold-Containing Family

Dmitrij Frishman

Journal:

Biochemical and Biophysical Research Communications

Année:

1996

Langue:

english

Fichier:

PDF, 138 KB

english, 1996

34

Recognition of distantly related protein sequences using conserved motifs and neural networks

Dmitrij Frishman, Patrick Argos

Journal:

Journal of Molecular Biology

Année:

1992

Langue:

english

Fichier:

PDF, 3.41 MB

english, 1992

35

Proteome-wide Analysis of Chaperonin-Dependent Protein Folding in Escherichia coli

Michael J. Kerner, Dean J. Naylor, Yasushi Ishihama, Tobias Maier, Hung-Chun Chang, Anna P. Stines, Costa Georgopoulos, Dmitrij Frishman, Manajit Hayer-Hartl, Matthias Mann, F. Ulrich Hartl

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 616 KB

english, 2005

36

Prediction of β-turns and β-turn types by a novel bidirectional Elman-type recurrent neural network with multiple output layers (MOLEBRNN)

Andreas Kirschner, Dmitrij Frishman

Journal:

Année:

2008

Langue:

english

Fichier:

PDF, 1.15 MB

english, 2008

37

A Domain Interaction Map Based on Phylogenetic Profiling

Philipp Pagel, Philip Wong, Dmitrij Frishman

Journal:

Journal of Molecular Biology

Année:

2004

Langue:

english

Fichier:

PDF, 1.60 MB

english, 2004

38

Phenylalanine Promotes Interaction of Transmembrane Domains via GxxxG Motifs

Stephanie Unterreitmeier, Angelika Fuchs, Teresa Schäffler, Roland G. Heym, Dmitrij Frishman, Dieter Langosch

Journal:

Journal of Molecular Biology

Année:

2007

Langue:

english

Fichier:

PDF, 1.14 MB

english, 2007

39

Complex Patterns of Histidine, Hydroxylated Amino Acids and the GxxxG Motif Mediate High-affinity Transmembrane Domain Interactions

Jana R. Herrmann, Johanna C. Panitz, Stephanie Unterreitmeier, Angelika Fuchs, Dmitrij Frishman, Dieter Langosch

Journal:

Journal of Molecular Biology

Année:

2009

Langue:

english

Fichier:

PDF, 762 KB

english, 2009

40

Ionic Interactions Promote Transmembrane Helix–Helix Association Depending on Sequence Context

Jana R. Herrmann, Angelika Fuchs, Johanna C. Panitz, Thomas Eckert, Stephanie Unterreitmeier, Dmitrij Frishman, Dieter Langosch

Journal:

Journal of Molecular Biology

Année:

2010

Langue:

english

Fichier:

PDF, 989 KB

english, 2010

41

Coevolution Predicts Direct Interactions between mtDNA-Encoded and nDNA-Encoded Subunits of Oxidative Phosphorylation Complex I

Moran Gershoni, Angelika Fuchs, Naama Shani, Yearit Fridman, Marisol Corral-Debrinski, Amir Aharoni, Dmitrij Frishman, Dan Mishmar

Journal:

Journal of Molecular Biology

Année:

2010

Langue:

english

Fichier:

PDF, 503 KB

english, 2010

42

Starts of bacterial genes: estimating the reliability of computer predictions

Dmitrij Frishman, Andrei Mironov, Mikhail Gelfand

Journal:

Année:

1999

Langue:

english

Fichier:

PDF, 334 KB

english, 1999

43

What We Have Learned about Prokaryotes from Structural Genomics

Frishman, Dmitrij

Journal:

Omics A Journal of Integrative Biology

Année:

2003

Langue:

english

Fichier:

PDF, 805 KB

english, 2003

44

Assignment of isochores for all completely sequenced vertebrate genomes using a consensus

Thorsten Schmidt, Dmitrij Frishman

Journal:

Année:

2008

Langue:

english

Fichier:

PDF, 794 KB

english, 2008

45

Modern Genome Annotation ||

Frishman, Dmitrij, Valencia, Alfonso

Année:

2008

Langue:

english

Fichier:

PDF, 8.00 MB

english, 2008

46

Protein Annotation at Genomic Scale: The Current Status

Frishman, Dmitrij

Journal:

Chemical Reviews

Année:

2007

Langue:

english

Fichier:

PDF, 539 KB

english, 2007

47

Prediction of protein interaction types based on sequence and network features

Goebels, Florian, Frishman, Dmitrij

Journal:

BMC Systems Biology

Année:

2013

Langue:

english

Fichier:

PDF, 1.39 MB

english, 2013

48

Genetic variability within the Polish tomato torrado virus Kra isolate caused by deletions in the 3′-untranslated region of genomic RNA1

Budziszewska, Marta, Wieczorek, Przemysław, Zhang, Yanping, Frishman, Dmitrij, Obrępalska-Stęplowska, Aleksandra

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 4.38 MB

english, 2014

49

Charge-Charge Interactions Promote Transmembrane Helix-Helix Association Depending on Sequence Context

Langosch, Dieter, Herrmann, Jana, Fuchs, Angelika, Panitz, Johanna, Unterreitmeier, Stephanie, Frishman, Dmitrij

Journal:

Biophysical Journal

Année:

2010

Langue:

english

Fichier:

PDF, 59 KB

english, 2010

50

How many signal peptides are there in bacteria?

Ivankov, Dmitry N., Payne, Samuel H., Galperin, Michael Y., Bonissone, Stefano, Pevzner, Pavel A., Frishman, Dmitrij

Journal:

Environmental Microbiology

Année:

2013

Langue:

english

Fichier:

PDF, 414 KB

english, 2013